Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12670679 chr7:36176341 C/A 0.000445 177 25.6 24.6 14.37 KM Plot
PCPG rs12672777 chr7:158871704 G/T 0 175 25.4 41.8 3.17 KM Plot
PCPG rs12675851 chr8:121510427 C/T 5.09E-6 175 27.27 25 19.87 KM Plot
PCPG rs12680935 chr8:121480400 T/A 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs12713184 chr2:24314158 C/A 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs12713185 chr2:24314292 T/C 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs12713186 chr2:24316208 C/T 0.000122 176 25.28 26.92 17.43 KM Plot
PCPG rs12713198 chr2:24325236 G/A 0.000132 175 25.17 26.92 17.43 KM Plot
PCPG rs12713199 chr2:24326937 C/T 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs12713201 chr2:24329919 A/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12713210 chr2:24351009 A/G 0.00011 178 25.17 27.27 17.43 KM Plot
PCPG rs12739174 chr1:40495726 G/A 3.09E-6 173 24.85 24.23 37.18 KM Plot
PCPG rs12739480 chr1:227171210 G/A 0.000173 171 25.08 25.97 2.3 KM Plot
PCPG rs12752417 chr1:109400639 A/C 3.15E-11 178 10.3 24.75 25.53 KM Plot
PCPG rs12758653 chr1:40494604 T/C 6.93E-5 175 24.85 24.88 36.73 KM Plot